Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015797768.1_cds_XP_016456554.1_4986
CDS Infomation

[gene=LOC107780507] [db_xref=GeneID:107780507] [protein=violaxanthin de-epoxidase, chloroplastic-like] [protein_id=XP_016456554.1] [location=join(67132..67410,67559..67725,68804..68900,68981..69372,69776..70277)] [gbkey=CDS]
Sequence

ATGGCTCTTGCCCCTCATTCAAACTTTCTCGCCAACCATGAAACCATCAGATATTATGTC
GGGTCAAAGTTTCCCGGTCATAAAAGGTTTAGCTGGGGATGGGAAGATTACTTTGGTAAT
ATATTCGTAGCGAAAATTTGTTCCAGCAGACGGATACCTAGATACTTTCGAAAATCTCCT
AGAATATGCAGCAGTTTGGATTCAAGAAGTTTGCAACTATTGTCACACGGGAAACACAAT
CTCTTTCCCGCACATAGCATTAACCAGAATGTATCTAAGGGAAATTCAGGAAGCAAATTT
CCAAAAGATGTAGCTTTGATGGTTTGGGAGAAATGGGGCCAATTTGCCAAAACAGCAATT
GTAGCTATATTCATTTTGTCAGTTGCTTCAAAAGCTGATGCGGTTGATGCTCTCAAGACT
TGTACTTGCTTACTGAAAGAGTGCAGGTTAGAGCTTGCGAAGTGCATTGCAAACCCTGCA
TGTGCAGCTAATGTTGCCTGTCTCCAGACTTGCAACAATAGACCTGACGAAACGGAATGT
CAGATAAAATGTGGTGATTTGTTTGAGAACAGTGTTGTAGACGAGTTCAATGAGTGTGCA
GTCTCCCGAAAGAAATGTGTACCTCGTAAATCTGATGTTGGTGACTTTCCTGTACCTGAT
CCAAGTGTTCTTGTCCAGAAGTTTGACATGAAAGATTTTAGCGGGAAATGGTTCATAACA
CGCGGTTTAAATCCCACTTTTGATGCTTTTGATTGTCAATTGCATGAGTTCCATACAGAA
GAAAACAAACTTGTGGGGAATTTATCGTGGAGAATAAGGACACCTGATGGAGGATTTTTT
ACTCGATCAGCGGTGCAAAAATTTGTGCAAGATCCAAAGTATCCAGGGATACTCTACAAT
CATGATAATGAGTATCTTCACTACCAAGATGACTGGTATATTTTGTCATCCAAAGTAGAA
AATAGTCCAGAGGATTACATATTTGTGTACTATAAGGGCAGAAATGATGCATGGGATGGA
TATGGTGGTTCTGTACTTTACACAAGAAGTGCAGTTTTGCCTGAAAGCATTATACCCGAG
TTGCAAACCGCCGCTCAAAAAGTTGGCCGTGATTTCAACACCTTCATAAAAACAGACAAT
ACATGTGGCCCTGAACCTCCCCTTGTTGAGAGGTTGGAGAAGAAGGTGGAAGAAGGCGAG
AGGACGATCATAAAAGAAGTCGAGGAGATAGAAGAAGAAGTAGAGAAGGTGAGAGATAAA
GAAGTCACCTTATTCAGTAGACTGTTTGAAGGTTTTAAAGAGCTCCAACGAGATGAAGAG
AACTTCTTAAGAGAGCTGAGCAAAGAAGAAATGGATGTTTTGGATGGACTTAAAATGGAG
GCAACTGAGGTAGAAAAACTTTTTGGGCGTGCTTTACCAATAAGGAAGTTAAGGTAA

Peptide Sequence

PEP ID

XP_016456554.1
PEP Infomation

PREDICTED: violaxanthin de-epoxidase, chloroplastic-like [Nicotiana tabacum]
Sequence

MALAPHSNFLANHETIRYYVGSKFPGHKRFSWGWEDYFGNIFVAKICSSRRIPRYFRKSP
RICSSLDSRSLQLLSHGKHNLFPAHSINQNVSKGNSGSKFPKDVALMVWEKWGQFAKTAI
VAIFILSVASKADAVDALKTCTCLLKECRLELAKCIANPACAANVACLQTCNNRPDETEC
QIKCGDLFENSVVDEFNECAVSRKKCVPRKSDVGDFPVPDPSVLVQKFDMKDFSGKWFIT
RGLNPTFDAFDCQLHEFHTEENKLVGNLSWRIRTPDGGFFTRSAVQKFVQDPKYPGILYN
HDNEYLHYQDDWYILSSKVENSPEDYIFVYYKGRNDAWDGYGGSVLYTRSAVLPESIIPE
LQTAAQKVGRDFNTFIKTDNTCGPEPPLVERLEKKVEEGERTIIKEVEEIEEEVEKVRDK
EVTLFSRLFEGFKELQRDEENFLRELSKEEMDVLDGLKMEATEVEKLFGRALPIRKLR

Transcript Sequence

Gene sequence data has not been registered.